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Publication examples
====================

.. image:: /_static/phenonaut.png
   :align: right

Two examples are given in the Phenonaut paper, one on the The Cancer Genome Atlas, utilising Phenonaut called from a Python program, and another where Phenonaut is applied to data with the Connectivity Map interactively, within a Jupyter notebook.

TCGA Example
------------

:doc:`tcga_example`.

CMAP Example
------------

:doc:`cmap_example`.